DAWN: Diversity Among Wheat geNomes
DAWN: Diversity Among Wheat geNomes
DAWN provides access to a variety of public wheat data sets in the context of the International Wheat Genome Sequencing Consortium’s (IWGSC) RefSeq v1.0 genome assembly [1]. This is achieved by pre-processing the data and making it available through a JBrowse genome browser.
Resources
- JBrowse
- Coordinate converter - convert coordinates from parts to/from whole pseudomolecules
- Open data at figshare: https://doi.org/10.4225/55/5a76e03723567
Help
Screenshots
DAWN Source Data Sets
The following data sets are available through DAWN:
- Reference sequence
- IWGSC RefSeq v1.0 genome assembly [1].
- Gene Annotations
- IWGSC v1.0
- IWGSC v1.1
- Markers (as part of IWGSC v1.0 annotation)
- DArT
- EST
- MAS
- SNP platforms
- SSR
- Whole genome shotgun data
- 16 wheat accessions (BPA [2])
- Chinese spring (ENA: PRJNA392179 [3])
- Transcriptomic data
- Exome data
Citing DAWN
Watson-Haigh, N.S., Suchecki, R., Kalashyan, E., Garcia, M. & Baumann, U. DAWN: a resource for yielding insights into the diversity among wheat genomes. BMC Genomics 2018 19:941. 10.1186/s12864-018-5228-2
External Resources
You may also find the following wheat related resources udeful: